Hierarchy For All Packages

Package Hierarchies:

• org.phenopackets.phenopackettools.builder,
• org.phenopackets.phenopackettools.builder.builders,
• org.phenopackets.phenopackettools.builder.constants,
• org.phenopackets.phenopackettools.converter.converters,
• org.phenopackets.phenopackettools.core,
• org.phenopackets.phenopackettools.io,
• org.phenopackets.phenopackettools.test,
• org.phenopackets.phenopackettools.util.format,
• org.phenopackets.phenopackettools.util.print,
• org.phenopackets.phenopackettools.validator.core,
• org.phenopackets.phenopackettools.validator.core.except,
• org.phenopackets.phenopackettools.validator.core.metadata,
• org.phenopackets.phenopackettools.validator.core.phenotype,
• org.phenopackets.phenopackettools.validator.core.writer,
• org.phenopackets.phenopackettools.validator.jsonschema

Class Hierarchy

• java.lang.Object
  • org.phenopackets.phenopackettools.builder.constants.AdministrationRoute
  • org.phenopackets.phenopackettools.builder.builders.Ages
  • org.phenopackets.phenopackettools.builder.builders.AlleleBuilder
  • org.phenopackets.phenopackettools.builder.constants.AllelicState
  • org.phenopackets.phenopackettools.builder.constants.Assays
  • org.phenopackets.phenopackettools.builder.builders.BiosampleBuilder
  • org.phenopackets.phenopackettools.builder.constants.BiospecimenType
  • org.phenopackets.phenopackettools.builder.builders.ComplexValueBuilder
  • org.phenopackets.phenopackettools.builder.builders.CopyNumberBuilder
  • org.phenopackets.phenopackettools.builder.builders.DiagnosisBuilder
  • org.phenopackets.phenopackettools.builder.builders.DiseaseBuilder
  • org.phenopackets.phenopackettools.builder.constants.DiseaseGrade
  • org.phenopackets.phenopackettools.builder.constants.DiseaseStage
  • org.phenopackets.phenopackettools.builder.builders.DoseIntervalBuilder
  • org.phenopackets.phenopackettools.util.format.ElementSniffer
  • org.phenopackets.phenopackettools.builder.constants.Evidence
  • org.phenopackets.phenopackettools.builder.builders.EvidenceBuilder
  • org.phenopackets.phenopackettools.builder.builders.Expressions
  • org.phenopackets.phenopackettools.builder.builders.Extensions
  • org.phenopackets.phenopackettools.builder.builders.ExternalReferenceBuilder
  • org.phenopackets.phenopackettools.builder.FamilyBuilder
  • org.phenopackets.phenopackettools.builder.builders.FileBuilder
  • org.phenopackets.phenopackettools.util.format.FormatSniffer
  • org.phenopackets.phenopackettools.builder.constants.Gender
  • org.phenopackets.phenopackettools.builder.builders.GeneDescriptorBuilder
  • org.phenopackets.phenopackettools.builder.builders.GenomicInterpretationBuilder
  • org.phenopackets.phenopackettools.validator.core.phenotype.HpoOrganSystems
  • org.phenopackets.phenopackettools.validator.core.phenotype.HpoPhenotypeValidators
  • org.phenopackets.phenopackettools.validator.core.phenotype.HpoPhenotypeValidators.Ancestry
  • org.phenopackets.phenopackettools.validator.core.phenotype.HpoPhenotypeValidators.OrganSystem
  • org.phenopackets.phenopackettools.validator.core.phenotype.HpoPhenotypeValidators.Primary
  • org.phenopackets.phenopackettools.builder.builders.IndividualBuilder
  • org.phenopackets.phenopackettools.builder.builders.InterpretationBuilder
  • org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunner<T> (implements org.phenopackets.phenopackettools.validator.core.ValidationWorkflowRunner<T>)
  • org.phenopackets.phenopackettools.builder.constants.Laterality
  • org.phenopackets.phenopackettools.builder.constants.MaterialSample
  • org.phenopackets.phenopackettools.builder.builders.MeasurementBuilder
  • org.phenopackets.phenopackettools.builder.builders.MedicalActionBuilder
  • org.phenopackets.phenopackettools.builder.constants.MedicalActions
  • org.phenopackets.phenopackettools.builder.builders.MetaDataBuilder
  • org.phenopackets.phenopackettools.validator.core.metadata.MetaDataValidators
  • org.phenopackets.phenopackettools.builder.constants.Onset
  • org.phenopackets.phenopackettools.builder.builders.OntologyClassBuilder
  • org.phenopackets.phenopackettools.builder.constants.Organ
  • org.phenopackets.phenopackettools.builder.constants.PathologicalTnm
  • org.phenopackets.phenopackettools.builder.builders.PedigreeBuilder
  • org.phenopackets.phenopackettools.builder.builders.PersonBuilder
  • org.phenopackets.phenopackettools.builder.PhenopacketBuilder
  • org.phenopackets.phenopackettools.validator.core.PhenopacketFormatConverters
  • org.phenopackets.phenopackettools.util.print.PhenopacketPrintUtil
  • org.phenopackets.phenopackettools.builder.builders.PhenotypicFeatureBuilder
  • org.phenopackets.phenopackettools.builder.builders.ProcedureBuilder
  • org.phenopackets.phenopackettools.builder.builders.QuantityBuilder
  • java.lang.Record
    • org.phenopackets.phenopackettools.validator.core.writer.ValidationResultsAndPath
  • org.phenopackets.phenopackettools.builder.builders.ReferenceRangeBuilder
  • org.phenopackets.phenopackettools.builder.builders.Resources
  • org.phenopackets.phenopackettools.builder.constants.Response
  • org.phenopackets.phenopackettools.builder.constants.Severity
  • org.phenopackets.phenopackettools.builder.constants.SpatialPattern
  • org.phenopackets.phenopackettools.builder.constants.Status
  • org.phenopackets.phenopackettools.test.TestData
  • org.phenopackets.phenopackettools.test.TestData.V1
  • org.phenopackets.phenopackettools.test.TestData.V2
  • org.phenopackets.phenopackettools.builder.builders.TherapeuticRegimenBuilder
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.phenopackets.phenopackettools.core.PhenopacketToolsException
        • org.phenopackets.phenopackettools.validator.core.ConversionException (implements org.phenopackets.phenopackettools.validator.core.ValidationResult)
        • org.phenopackets.phenopackettools.validator.core.except.PhenopacketValidatorException
          • org.phenopackets.phenopackettools.validator.core.except.PhenopacketValidatorInputException
        • org.phenopackets.phenopackettools.util.format.SniffException
          • org.phenopackets.phenopackettools.util.format.ElementSniffException
          • org.phenopackets.phenopackettools.util.format.FormatSniffException
      • java.lang.RuntimeException
        • org.phenopackets.phenopackettools.core.PhenopacketToolsRuntimeException
          • org.phenopackets.phenopackettools.io.PhenopacketParserFactoryException
          • org.phenopackets.phenopackettools.io.PhenopacketPrinterFactoryException
          • org.phenopackets.phenopackettools.validator.core.except.PhenopacketValidatorRuntimeException
  • org.phenopackets.phenopackettools.builder.builders.TimeElements
  • org.phenopackets.phenopackettools.builder.builders.TimeIntervalBuilder
  • org.phenopackets.phenopackettools.builder.builders.TimestampBuilder
  • org.phenopackets.phenopackettools.builder.builders.TreatmentBuilder
  • org.phenopackets.phenopackettools.builder.constants.TreatmentTermination
  • org.phenopackets.phenopackettools.builder.constants.TumorProgression
  • org.phenopackets.phenopackettools.builder.builders.TypedQuantityBuilder
  • org.phenopackets.phenopackettools.builder.constants.Unit
  • org.phenopackets.phenopackettools.validator.core.ValidationResults.Builder
  • org.phenopackets.phenopackettools.validator.core.ValidationWorkflowRunnerBuilder<T>
    • org.phenopackets.phenopackettools.validator.jsonschema.JsonSchemaValidationWorkflowRunnerBuilder<T>
  • org.phenopackets.phenopackettools.builder.builders.ValueBuilder
  • org.phenopackets.phenopackettools.builder.builders.VariantInterpretationBuilder
  • org.phenopackets.phenopackettools.builder.builders.VariationDescriptorBuilder
  • org.phenopackets.phenopackettools.builder.builders.VcfRecordBuilder
  • org.phenopackets.phenopackettools.builder.builders.VitalStatusBuilder

Interface Hierarchy

• org.phenopackets.phenopackettools.validator.core.PhenopacketFormatConverter<T>
• org.phenopackets.phenopackettools.io.PhenopacketParser
• org.phenopackets.phenopackettools.io.PhenopacketParserFactory
• org.phenopackets.phenopackettools.io.PhenopacketPrinter
• org.phenopackets.phenopackettools.io.PhenopacketPrinterFactory
• org.phenopackets.phenopackettools.validator.core.PhenopacketValidator<T>
• org.phenopackets.phenopackettools.converter.converters.V1ToV2Converter
• org.phenopackets.phenopackettools.validator.core.ValidationResult
• org.phenopackets.phenopackettools.validator.core.ValidationResults
• org.phenopackets.phenopackettools.validator.core.writer.ValidationResultsWriter
• org.phenopackets.phenopackettools.validator.core.ValidationWorkflowDispatcher
• org.phenopackets.phenopackettools.validator.core.ValidationWorkflowRunner<T>
• org.phenopackets.phenopackettools.validator.core.ValidatorInfo

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • org.phenopackets.phenopackettools.core.PhenopacketElement
    • org.phenopackets.phenopackettools.core.PhenopacketFormat
    • org.phenopackets.phenopackettools.core.PhenopacketSchemaVersion
    • org.phenopackets.phenopackettools.validator.core.ValidationLevel