Module org.phenopackets.phenopackettools.validator.core

Package org.phenopackets.phenopackettools.validator.core

Class ValidationWorkflowRunnerBuilder<T extends com.google.protobuf.MessageOrBuilder>

java.lang.Object

org.phenopackets.phenopackettools.validator.core.ValidationWorkflowRunnerBuilder<T>

Type Parameters:

T - type of the top-level element of the Phenopacket Schema.

Direct Known Subclasses:

JsonSchemaValidationWorkflowRunnerBuilder

public abstract class ValidationWorkflowRunnerBuilder<T extends com.google.protobuf.MessageOrBuilder>
extends Object

The base builder for constructing ValidationWorkflowRunner. The builder keeps track of the validators and builds the ValidationWorkflowRunner at the end.

Field Summary

Fields

Modifier and Type	Field	Description
protected final List<PhenopacketValidator<T>>	semanticValidators	Deprecated, for removal: This API element is subject to removal in a future version. use validators instead
protected final List<PhenopacketValidator<T>>	syntaxValidators	Deprecated, for removal: This API element is subject to removal in a future version. use validators instead
protected final List<PhenopacketValidator<T>>	validators

Constructor Summary

Constructors

Constructor	Description
ValidationWorkflowRunnerBuilder()

Method Summary

Modifier and Type	Method	Description
ValidationWorkflowRunnerBuilder<T>	addAllSemanticValidators(List<PhenopacketValidator<T>> validators)	Deprecated, for removal: This API element is subject to removal in a future version. use addValidators(Collection) instead
ValidationWorkflowRunnerBuilder<T>	addAllSyntaxValidators(List<PhenopacketValidator<T>> validators)	Deprecated, for removal: This API element is subject to removal in a future version. use addValidators(Collection) instead
ValidationWorkflowRunnerBuilder<T>	addSemanticValidator(PhenopacketValidator<T> semanticValidator)	Deprecated, for removal: This API element is subject to removal in a future version. use addValidator(PhenopacketValidator) instead
ValidationWorkflowRunnerBuilder<T>	addSyntaxValidator(PhenopacketValidator<T> syntaxValidator)	Deprecated, for removal: This API element is subject to removal in a future version. use addValidator(PhenopacketValidator) instead
ValidationWorkflowRunnerBuilder<T>	addValidator(PhenopacketValidator<T> validator)	Add a validator to the end of the workflow.
ValidationWorkflowRunnerBuilder<T>	addValidators(Collection<? extends PhenopacketValidator<T>> validators)	Add validators to the end of the workflow.
abstract ValidationWorkflowRunner<T>	build()	Finish building of the ValidationWorkflowRunner.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

validators

protected final List<PhenopacketValidator<T extends com.google.protobuf.MessageOrBuilder>> validators

syntaxValidators

@Deprecated(forRemoval=true,
            since="0.4.8")
protected final List<PhenopacketValidator<T extends com.google.protobuf.MessageOrBuilder>> syntaxValidators

Deprecated, for removal: This API element is subject to removal in a future version.

use validators instead

semanticValidators

@Deprecated(forRemoval=true,
            since="0.4.8")
protected final List<PhenopacketValidator<T extends com.google.protobuf.MessageOrBuilder>> semanticValidators

Deprecated, for removal: This API element is subject to removal in a future version.

use validators instead

Constructor Details

ValidationWorkflowRunnerBuilder

public ValidationWorkflowRunnerBuilder()

Method Details

addValidator

public ValidationWorkflowRunnerBuilder<T> addValidator(PhenopacketValidator<T> validator)

Add a validator to the end of the workflow.

addValidators

public ValidationWorkflowRunnerBuilder<T> addValidators(Collection<? extends PhenopacketValidator<T>> validators)

Add validators to the end of the workflow.

addSyntaxValidator

@Deprecated(forRemoval=true,
            since="0.4.8")
public ValidationWorkflowRunnerBuilder<T> addSyntaxValidator(PhenopacketValidator<T> syntaxValidator)

Deprecated, for removal: This API element is subject to removal in a future version.

use addValidator(PhenopacketValidator) instead

Add a syntax validator.

Parameters:

syntaxValidator - the syntax validator

Returns:

the builder

addAllSyntaxValidators

@Deprecated(forRemoval=true,
            since="0.4.8")
public ValidationWorkflowRunnerBuilder<T> addAllSyntaxValidators(List<PhenopacketValidator<T>> validators)

Deprecated, for removal: This API element is subject to removal in a future version.

use addValidators(Collection) instead

Add syntax validators in bulk.

Parameters:

validators - the syntax validators

Returns:

the builder

addSemanticValidator

@Deprecated(forRemoval=true,
            since="0.4.8")
public ValidationWorkflowRunnerBuilder<T> addSemanticValidator(PhenopacketValidator<T> semanticValidator)

Deprecated, for removal: This API element is subject to removal in a future version.

use addValidator(PhenopacketValidator) instead

Add a semantic validator.

Parameters:

semanticValidator - the semantic validator

Returns:

the builder

addAllSemanticValidators

@Deprecated(forRemoval=true,
            since="0.4.8")
public ValidationWorkflowRunnerBuilder<T> addAllSemanticValidators(List<PhenopacketValidator<T>> validators)

Deprecated, for removal: This API element is subject to removal in a future version.

use addValidators(Collection) instead

Add semantic validators in bulk.

Parameters:

validators - the semantic validators

Returns:

the builder

build

public abstract ValidationWorkflowRunner<T> build()

Finish building of the ValidationWorkflowRunner.

Returns:

the runner