Module org.phenopackets.phenopackettools.builder

Package org.phenopackets.phenopackettools.builder.builders

Class GeneDescriptorBuilder

java.lang.Object

org.phenopackets.phenopackettools.builder.builders.GeneDescriptorBuilder

public class GeneDescriptorBuilder
extends Object

Method Summary

Modifier and Type	Method	Description
GeneDescriptorBuilder	addAllAlternateIds(List<String> altIds)
GeneDescriptorBuilder	addAllAlternateSymbols(List<String> altSymbols)
GeneDescriptorBuilder	addAllXrefs(List<String> xrefs)
GeneDescriptorBuilder	addAlternateId(String altId)
GeneDescriptorBuilder	addAlternateSymbol(String altSymbol)
GeneDescriptorBuilder	addXref(String xref)
org.ga4gh.vrsatile.v1.GeneDescriptor	build()
static GeneDescriptorBuilder	builder(String valueId, String symbol)
GeneDescriptorBuilder	description(String desc)
static org.ga4gh.vrsatile.v1.GeneDescriptor	of(String valueId, String symbol)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

of

public static org.ga4gh.vrsatile.v1.GeneDescriptor of(String valueId,
 String symbol)

Parameters:

valueId - Official identifier of the gene, e.g., HGNC:3603

symbol - Official gene symbol, e.g., FBN1

Returns:

completely built GeneDescriptor object

builder

public static GeneDescriptorBuilder builder(String valueId,
 String symbol)

Parameters:

valueId - Official identifier of the gene, e.g., HGNC:3603

symbol - Official gene symbol, e.g., FBN1

Returns:

GeneDescriptorBuilder that can be used to set additional field values

description

public GeneDescriptorBuilder description(String desc)

addAlternateId

public GeneDescriptorBuilder addAlternateId(String altId)

addAllAlternateIds

public GeneDescriptorBuilder addAllAlternateIds(List<String> altIds)

addXref

public GeneDescriptorBuilder addXref(String xref)

addAllXrefs

public GeneDescriptorBuilder addAllXrefs(List<String> xrefs)

addAlternateSymbol

public GeneDescriptorBuilder addAlternateSymbol(String altSymbol)

addAllAlternateSymbols

public GeneDescriptorBuilder addAllAlternateSymbols(List<String> altSymbols)

build

public org.ga4gh.vrsatile.v1.GeneDescriptor build()