Module org.phenopackets.phenopackettools.builder

Package org.phenopackets.phenopackettools.builder.builders

Class Expressions

java.lang.Object

org.phenopackets.phenopackettools.builder.builders.Expressions

public class Expressions
extends Object

Constructor Summary

Constructors

Constructor	Description
Expressions()

Method Summary

Modifier and Type	Method	Description
static org.ga4gh.vrsatile.v1.Expression	hgvsCdna(String hgvsExpression)	An Human Genome Variation Society (HGVS) expression that denotes a DNA variant https://varnomen.hgvs.org/
static org.ga4gh.vrsatile.v1.Expression	transcriptReference(String value)	The identifier of the transcript that is used as a reference for a variant

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Expressions

public Expressions()

Method Details

hgvsCdna

public static org.ga4gh.vrsatile.v1.Expression hgvsCdna(String hgvsExpression)

An Human Genome Variation Society (HGVS) expression that denotes a DNA variant https://varnomen.hgvs.org/

Parameters:

hgvsExpression - a String such as NM_004006.1:c.3>T

transcriptReference

public static org.ga4gh.vrsatile.v1.Expression transcriptReference(String value)

The identifier of the transcript that is used as a reference for a variant

Parameters:

value - a string such as "NM_000321.2"