Module org.phenopackets.phenopackettools.builder

Package org.phenopackets.phenopackettools.builder.builders

Class Extensions

java.lang.Object

org.phenopackets.phenopackettools.builder.builders.Extensions

public class Extensions
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
static final String	ALLELE_FREQUENCY
static final String	MOSAICISM

Constructor Summary

Constructors

Constructor	Description
Extensions()

Method Summary

Modifier and Type	Method	Description
static org.ga4gh.vrsatile.v1.Extension	alleleFrequency(double frequency)
static org.ga4gh.vrsatile.v1.Extension	mosaicism(double percentage)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

MOSAICISM

public static final String MOSAICISM

See Also:

• Constant Field Values

ALLELE_FREQUENCY

public static final String ALLELE_FREQUENCY

See Also:

• Constant Field Values

Constructor Details

Extensions

public Extensions()

Method Details

mosaicism

public static org.ga4gh.vrsatile.v1.Extension mosaicism(double percentage)

alleleFrequency

public static org.ga4gh.vrsatile.v1.Extension alleleFrequency(double frequency)

Parameters:

frequency - estimated frequency (IN PERCENT) of an allele (generally a somatic mutation)