Module org.phenopackets.phenopackettools.builder

Package org.phenopackets.phenopackettools.builder

Class PhenopacketBuilder

java.lang.Object

org.phenopackets.phenopackettools.builder.PhenopacketBuilder

public class PhenopacketBuilder
extends Object

Method Summary

Modifier and Type	Method	Description
PhenopacketBuilder	addAllBiosamples(List<org.phenopackets.schema.v2.core.Biosample> biosampleList)
PhenopacketBuilder	addBiosample(org.phenopackets.schema.v2.core.Biosample biosample)
PhenopacketBuilder	addDisease(org.phenopackets.schema.v2.core.Disease disease)
PhenopacketBuilder	addDiseases(List<org.phenopackets.schema.v2.core.Disease> diseaseList)
PhenopacketBuilder	addFile(org.phenopackets.schema.v2.core.File file)
PhenopacketBuilder	addInterpretation(org.phenopackets.schema.v2.core.Interpretation interpretation)
PhenopacketBuilder	addMeasurement(org.phenopackets.schema.v2.core.Measurement measurement)
PhenopacketBuilder	addMeasurements(List<org.phenopackets.schema.v2.core.Measurement> measurementList)
PhenopacketBuilder	addMedicalAction(org.phenopackets.schema.v2.core.MedicalAction medicalAction)
PhenopacketBuilder	addMedicalActions(List<org.phenopackets.schema.v2.core.MedicalAction> previousTreatments)
PhenopacketBuilder	addPhenotypicFeature(String id, String label)
PhenopacketBuilder	addPhenotypicFeature(org.phenopackets.schema.v2.core.PhenotypicFeature feature)
PhenopacketBuilder	addPhenotypicFeatures(List<org.phenopackets.schema.v2.core.PhenotypicFeature> features)
org.phenopackets.schema.v2.Phenopacket	build()
static PhenopacketBuilder	create(String id, org.phenopackets.schema.v2.core.MetaData metaData)
PhenopacketBuilder	individual(org.phenopackets.schema.v2.core.Individual subject)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

create

public static PhenopacketBuilder create(String id,
 org.phenopackets.schema.v2.core.MetaData metaData)

individual

public PhenopacketBuilder individual(org.phenopackets.schema.v2.core.Individual subject)

addPhenotypicFeature

public PhenopacketBuilder addPhenotypicFeature(String id,
 String label)

addPhenotypicFeature

public PhenopacketBuilder addPhenotypicFeature(org.phenopackets.schema.v2.core.PhenotypicFeature feature)

addPhenotypicFeatures

public PhenopacketBuilder addPhenotypicFeatures(List<org.phenopackets.schema.v2.core.PhenotypicFeature> features)

addMeasurement

public PhenopacketBuilder addMeasurement(org.phenopackets.schema.v2.core.Measurement measurement)

addMeasurements

public PhenopacketBuilder addMeasurements(List<org.phenopackets.schema.v2.core.Measurement> measurementList)

addBiosample

public PhenopacketBuilder addBiosample(org.phenopackets.schema.v2.core.Biosample biosample)

addAllBiosamples

public PhenopacketBuilder addAllBiosamples(List<org.phenopackets.schema.v2.core.Biosample> biosampleList)

addInterpretation

public PhenopacketBuilder addInterpretation(org.phenopackets.schema.v2.core.Interpretation interpretation)

addDisease

public PhenopacketBuilder addDisease(org.phenopackets.schema.v2.core.Disease disease)

addDiseases

public PhenopacketBuilder addDiseases(List<org.phenopackets.schema.v2.core.Disease> diseaseList)

addMedicalAction

public PhenopacketBuilder addMedicalAction(org.phenopackets.schema.v2.core.MedicalAction medicalAction)

addFile

public PhenopacketBuilder addFile(org.phenopackets.schema.v2.core.File file)

build

public org.phenopackets.schema.v2.Phenopacket build()

addMedicalActions

public PhenopacketBuilder addMedicalActions(List<org.phenopackets.schema.v2.core.MedicalAction> previousTreatments)