Module org.phenopackets.phenopackettools.builder

Package org.phenopackets.phenopackettools.builder.builders

Class VariantInterpretationBuilder

java.lang.Object

org.phenopackets.phenopackettools.builder.builders.VariantInterpretationBuilder

public class VariantInterpretationBuilder
extends Object

Method Summary

Modifier and Type	Method	Description
VariantInterpretationBuilder	acmgNotProvided()
VariantInterpretationBuilder	actionabilityUnknown()
VariantInterpretationBuilder	actionable()
VariantInterpretationBuilder	benign()
org.phenopackets.schema.v2.core.VariantInterpretation	build()
static VariantInterpretationBuilder	builder(org.ga4gh.vrsatile.v1.VariationDescriptor descriptor)
static VariantInterpretationBuilder	builder(VariationDescriptorBuilder builder)
VariantInterpretationBuilder	likelyBenign()
VariantInterpretationBuilder	likelyPathogenic()
VariantInterpretationBuilder	notActionable()
static org.phenopackets.schema.v2.core.VariantInterpretation	of(org.ga4gh.vrsatile.v1.VariationDescriptor descriptor, org.phenopackets.schema.v2.core.AcmgPathogenicityClassification acmgPathogenicityClassification)
static org.phenopackets.schema.v2.core.VariantInterpretation	of(org.ga4gh.vrsatile.v1.VariationDescriptor descriptor, org.phenopackets.schema.v2.core.AcmgPathogenicityClassification acmgPathogenicityClassification, org.phenopackets.schema.v2.core.TherapeuticActionability therapeuticActionability)
VariantInterpretationBuilder	pathogenic()
VariantInterpretationBuilder	uncertainSignificance()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

of

public static org.phenopackets.schema.v2.core.VariantInterpretation of(org.ga4gh.vrsatile.v1.VariationDescriptor descriptor,
 org.phenopackets.schema.v2.core.AcmgPathogenicityClassification acmgPathogenicityClassification)

of

public static org.phenopackets.schema.v2.core.VariantInterpretation of(org.ga4gh.vrsatile.v1.VariationDescriptor descriptor,
 org.phenopackets.schema.v2.core.AcmgPathogenicityClassification acmgPathogenicityClassification,
 org.phenopackets.schema.v2.core.TherapeuticActionability therapeuticActionability)

builder

public static VariantInterpretationBuilder builder(org.ga4gh.vrsatile.v1.VariationDescriptor descriptor)

builder

public static VariantInterpretationBuilder builder(VariationDescriptorBuilder builder)

acmgNotProvided

public VariantInterpretationBuilder acmgNotProvided()

benign

public VariantInterpretationBuilder benign()

likelyBenign

public VariantInterpretationBuilder likelyBenign()

uncertainSignificance

public VariantInterpretationBuilder uncertainSignificance()

likelyPathogenic

public VariantInterpretationBuilder likelyPathogenic()

pathogenic

public VariantInterpretationBuilder pathogenic()

actionabilityUnknown

public VariantInterpretationBuilder actionabilityUnknown()

notActionable

public VariantInterpretationBuilder notActionable()

actionable

public VariantInterpretationBuilder actionable()

build

public org.phenopackets.schema.v2.core.VariantInterpretation build()