Uses of Class
org.phenopackets.phenopackettools.builder.builders.BiosampleBuilder

Packages that use BiosampleBuilder

Package	Description
org.phenopackets.phenopackettools.builder.builders	A package with convenience methods and builders for creating Phenopacket Schema building blocks.

Uses of BiosampleBuilder in org.phenopackets.phenopackettools.builder.builders

Methods in org.phenopackets.phenopackettools.builder.builders that return BiosampleBuilder

Modifier and Type	Method	Description
BiosampleBuilder	BiosampleBuilder.addAllDiagnosticMarkers(List<org.phenopackets.schema.v2.core.OntologyClass> markers)
BiosampleBuilder	BiosampleBuilder.addAllFiles(List<org.phenopackets.schema.v2.core.File> files)
BiosampleBuilder	BiosampleBuilder.addAllMeasurements(List<org.phenopackets.schema.v2.core.Measurement> measurements)
BiosampleBuilder	BiosampleBuilder.addAllPathologicalTnmFindings(List<org.phenopackets.schema.v2.core.OntologyClass> tnmFindings)
BiosampleBuilder	BiosampleBuilder.addAllPhenotypicFeatures(List<org.phenopackets.schema.v2.core.PhenotypicFeature> features)
BiosampleBuilder	BiosampleBuilder.addDiagnosticMarker(org.phenopackets.schema.v2.core.OntologyClass marker)
BiosampleBuilder	BiosampleBuilder.addFile(org.phenopackets.schema.v2.core.File file)
BiosampleBuilder	BiosampleBuilder.addMeasurement(org.phenopackets.schema.v2.core.Measurement measurement)
BiosampleBuilder	BiosampleBuilder.addPathologicalTnmFinding(org.phenopackets.schema.v2.core.OntologyClass tnmFinding)
BiosampleBuilder	BiosampleBuilder.addPhenotypicFeature(String id, String label)
BiosampleBuilder	BiosampleBuilder.addPhenotypicFeature(org.phenopackets.schema.v2.core.PhenotypicFeature feature)
static BiosampleBuilder	BiosampleBuilder.builder(String id)
BiosampleBuilder	BiosampleBuilder.derivedFromId(String id)
BiosampleBuilder	BiosampleBuilder.description(String desc)
BiosampleBuilder	BiosampleBuilder.histologicalDiagnosis(org.phenopackets.schema.v2.core.OntologyClass histologicalDiagnosis)
BiosampleBuilder	BiosampleBuilder.individualId(String id)
BiosampleBuilder	BiosampleBuilder.materialSample(org.phenopackets.schema.v2.core.OntologyClass material)
BiosampleBuilder	BiosampleBuilder.pathologicalStage(org.phenopackets.schema.v2.core.OntologyClass stage)
BiosampleBuilder	BiosampleBuilder.procedure(org.phenopackets.schema.v2.core.Procedure procedure)
BiosampleBuilder	BiosampleBuilder.sampledTissue(org.phenopackets.schema.v2.core.OntologyClass tissue)
BiosampleBuilder	BiosampleBuilder.sampledType(org.phenopackets.schema.v2.core.OntologyClass tissue)
BiosampleBuilder	BiosampleBuilder.sampleProcessing(org.phenopackets.schema.v2.core.OntologyClass processing)
BiosampleBuilder	BiosampleBuilder.sampleStorage(org.phenopackets.schema.v2.core.OntologyClass storage)
BiosampleBuilder	BiosampleBuilder.taxonomy(org.phenopackets.schema.v2.core.OntologyClass taxon)
BiosampleBuilder	BiosampleBuilder.timeOfCollection(org.phenopackets.schema.v2.core.TimeElement time)
BiosampleBuilder	BiosampleBuilder.tumorGrade(org.phenopackets.schema.v2.core.OntologyClass grade)
BiosampleBuilder	BiosampleBuilder.tumorProgression(org.phenopackets.schema.v2.core.OntologyClass progression)