Uses of Class
org.phenopackets.phenopackettools.builder.builders.VariationDescriptorBuilder

Packages that use VariationDescriptorBuilder

Package	Description
org.phenopackets.phenopackettools.builder.builders	A package with convenience methods and builders for creating Phenopacket Schema building blocks.

Uses of VariationDescriptorBuilder in org.phenopackets.phenopackettools.builder.builders

Methods in org.phenopackets.phenopackettools.builder.builders that return VariationDescriptorBuilder

Modifier and Type	Method	Description
VariationDescriptorBuilder	VariationDescriptorBuilder.addAllAlternateLabels(List<String> altLabels)
VariationDescriptorBuilder	VariationDescriptorBuilder.addAllXrefs(List<String> xrefs)
VariationDescriptorBuilder	VariationDescriptorBuilder.addAlternateLabel(String altLabel)
VariationDescriptorBuilder	VariationDescriptorBuilder.addExpression(org.ga4gh.vrsatile.v1.Expression expression)
VariationDescriptorBuilder	VariationDescriptorBuilder.addXref(String xref)
VariationDescriptorBuilder	VariationDescriptorBuilder.alleleFrequency(double frequency)
static VariationDescriptorBuilder	VariationDescriptorBuilder.builder()	Deprecated, for removal: This API element is subject to removal in a future version. use builder(String) instead.
static VariationDescriptorBuilder	VariationDescriptorBuilder.builder(String variantId)
VariationDescriptorBuilder	VariationDescriptorBuilder.description(String desc)
VariationDescriptorBuilder	VariationDescriptorBuilder.geneContext(org.ga4gh.vrsatile.v1.GeneDescriptor gene)
VariationDescriptorBuilder	VariationDescriptorBuilder.genomic()
VariationDescriptorBuilder	VariationDescriptorBuilder.hemizygous()
VariationDescriptorBuilder	VariationDescriptorBuilder.heterozygous()
VariationDescriptorBuilder	VariationDescriptorBuilder.hgvs(String value)
VariationDescriptorBuilder	VariationDescriptorBuilder.homozygous()
VariationDescriptorBuilder	VariationDescriptorBuilder.iscn(String value)
VariationDescriptorBuilder	VariationDescriptorBuilder.label(String lbl)
VariationDescriptorBuilder	VariationDescriptorBuilder.moleculeContext(org.ga4gh.vrsatile.v1.MoleculeContext context)
VariationDescriptorBuilder	VariationDescriptorBuilder.mosaicism(double percentage)
VariationDescriptorBuilder	VariationDescriptorBuilder.protein()
VariationDescriptorBuilder	VariationDescriptorBuilder.spdi(String value)
VariationDescriptorBuilder	VariationDescriptorBuilder.structuralType(org.phenopackets.schema.v2.core.OntologyClass structuralType)
VariationDescriptorBuilder	VariationDescriptorBuilder.transcript()
VariationDescriptorBuilder	VariationDescriptorBuilder.unspecifiedZygosity()
VariationDescriptorBuilder	VariationDescriptorBuilder.variation(org.ga4gh.vrs.v1.Variation variation)
VariationDescriptorBuilder	VariationDescriptorBuilder.vcfHg37(String chromosome, int position, String ref, String alt)
VariationDescriptorBuilder	VariationDescriptorBuilder.vcfHg38(String chromosome, int position, String ref, String alt)
VariationDescriptorBuilder	VariationDescriptorBuilder.vcfRecord(org.ga4gh.vrsatile.v1.VcfRecord vcf)
VariationDescriptorBuilder	VariationDescriptorBuilder.zygosity(org.phenopackets.schema.v2.core.OntologyClass zygo)

Methods in org.phenopackets.phenopackettools.builder.builders with parameters of type VariationDescriptorBuilder

Modifier and Type	Method	Description
static VariantInterpretationBuilder	VariantInterpretationBuilder.builder(VariationDescriptorBuilder builder)